World's first computer model of organism created
Sunday July 22, 2012 12:33:29 PM, IANS
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Washington: Scientists have created the world's first ever computer model of
an organism -- a breakthrough which would catalyse radically new
approaches to diagnostics and treatment.
A team led by Markus Covert, assistant professor of bioengineering
at the Stanford University, used data from more than 900
scientific papers to account for every molecular interaction that
takes place in the life cycle of Mycoplasma genitalium.
M. genitalium, the world's smallest free-living bacterium, shows
up uninvited in human urogenital and respiratory tracts.
The pathogen also contains the smallest genome of any free-living
organism, only 525 genes, as opposed to the 4,288 of E. coli, a
more traditional lab bug, the journal Cell reports.
Even at this small scale, the quantity of data that the Stanford
researchers incorporated into the virtual cell's code was
enormous.
The final model made use of more than 1,900 experimentally
determined parameters, according to a Stanford statement.
"Comprehensive computer models of entire cells have the potential
to advance our understanding of cellular function and, ultimately,
to inform new approaches for the diagnosis and treatment of
disease," said James M. Anderson, director of the National
Institutes of Health Division of Programme Coordination, Planning
and Strategic Initiatives, which had part funded the research.
Most biological experiments, however, still take a reductionist
approach to this vast array of data: knocking out a single gene
and seeing what happens.
"Many of the issues we're interested in aren't single-gene
problems," said Covert. "They're the complex result of hundreds or
thousands of genes interacting."
"You don't really understand how something works until you can
reproduce it yourself," said Jayodita Sanghvi, Stanford
bioengineering graduate student and study co-author.
"The goal hasn't only been to understand M. genitalium better.
It's to understand biology generally," said study co-author and
Stanford biophysics graduate student Jonathan Karr.
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